AI JOB 2: Navigation Index & Cross-Reference Maps

Your Role

You are building the navigation layer for a large Theophysics research vault being published as a Quartz v4 website. The content is already cleaned. Your job: create index pages, maps of content, and a landing page so readers can navigate the full framework.

Source Directory

O:\_Theophysics_v3\04_THEOPYHISCS\

The Structure You’re Indexing

This vault contains ~15 major sections:

DirectoryWhat It Contains
GENESIS TO QUANTUM The Seven-Article Series/7 public articles + 5 tangent pieces (the Substack series)
__LOGOS_FOUNDATION_DONE/14 formal academic papers (Papers 00-13)
AXIOM_FOUNDATIONS/22 axiom definition files
Laws/The 10 Laws of Theophysics, each with sub-files
Master Eq/Master Equation breakdown by law (11 laws + intro/outro)
Trinity/Trinity papers, evidence pack, person-of-Trinity files
Consciousness_System/40105 funnel of consciousness research
Spirits/Spirit taxonomy (S0, SA, SD, SP series)
Theological_Engineering/3 proof papers + counseling/church audit
Cross-Domain Coherence Project/Applications across psychology, economics, semantics
THREE TRUTHS/De Revolutionibus Veritatis (5 papers + supporting)
UNIFIED_COHERENCE/Coherence metric, response to critics, two-track integration
ALL_HYPOTHESES_AND_FALSIFIABLE/Core hypotheses, test predictions, self-critiques
TOPICS/15 topic stubs (P1-P15) covering all major concepts
Foundational_Papers/Axioms complete, defense depth paper

Tasks (in order)

1. Create Section Index Files

For each major directory above, create or update an index.md that:

  • Has proper frontmatter with title and tags
  • Lists every file in that directory with a wikilink and one-line description
  • Groups files logically (not just alphabetically)

Example format:

 
## Ring 2 — Canonical Grounding
 
- [[00_Canonical/TH_Historical_Docs/Speeches/_INDEX.md| INDEX]]
- [[00_Canonical/_Documentation/MASTER_INDEX.md|MASTER INDEX]]
- [[00_Canonical/TH_Scripture/Bahai/Kitab_i_Aqdas_REFERENCE.md|Kitab i Aqdas REFERENCE]]
 
## Ring 3 — Framework Connections
 
- [[00_Canonical/MASTER_EQUATION_10_LAWS/TEN_LAWS_CANONICAL_EQUATIONS|Ten Laws — Canonical Equations]]
- [[00_Canonical/MASTER_EQUATION_10_LAWS/INDEX|Master Equation Index]]
 
---
title: "The 10 Laws of Theophysics"
tags: [index, law, master-equation]
---
 
# The 10 Laws of Theophysics
 
## Law Files
- Law 1: Universal Gravitation -> Sin's Pull -- Gravitational analogy for the pull of sin
- Law 2: ... -- ...

2. Create the Master Landing Page

Replace or create O:\_Theophysics_v3\04_THEOPYHISCS\index.md as the site homepage.

Structure it as:

  1. One-paragraph introduction to Theophysics (find it in AN INTRODUCTION TO THEOPHYSICS.md or THEOPHYSICS_WELCOME 1.md)
  2. Start Here section linking to the Genesis to Quantum series (public-facing entry point)
  3. The Framework section linking to Axiom Foundations, The 10 Laws, The Master Equation, The Trinity
  4. Formal Papers linking to the 14 Logos Foundation papers
  5. Evidence & Testing linking to Hypotheses, Falsification, Consciousness System
  6. Applications linking to Cross-Domain, Theological Engineering, Three Truths, Unified Coherence
  7. Reference linking to Topics index, Spirits taxonomy

Use wikilinks throughout: Genesis to Quantum

3. Build Cross-Reference File

A file already exists: GENESIS TO QUANTUM The Seven-Article Series/LOGOS_GTQ_CROSSREF.md

Create an expanded version at O:\_Theophysics_v3\04_THEOPYHISCS\_MASTER_CROSSREF.md that maps:

  • Which Laws appear in which Papers
  • Which Axioms underpin which Laws
  • Which Papers cite which experimental evidence (PEAR-LAB, GCP, PROP-COSMOS)
  • Which Topics map to which formal Papers

Read the actual files to build this — don’t guess.

After creating indexes, verify every wikilink in your index files actually points to an existing file. Log any that don’t resolve.

Output

  • One index.md per major section (~15 files)
  • One master index.md at root
  • One _MASTER_CROSSREF.md
  • One _INDEX_BUILD_LOG.md listing what you created and any unresolved links

Rules

  • Use wikilinks exclusively — no markdown [text](url) links
  • Read files before describing them — don’t guess from filenames
  • Keep descriptions to one line per file in indexes
  • The landing page should be readable by someone who knows nothing about Theophysics

Canonical Hub: CANONICAL_INDEX